Description des actions et des retours d’exp\u00e9rience dans la pratique de JBrowse2. Notre d\u00e9marche dans cette exp\u00e9rimentation tes la suivante pour s’approprier du potentiel qu’offre cette solution et de les partager. <\/p>\n\n\n\n
Explorations des plugins :<\/p>\n\n\n\n
L’installation de ces plugins se fait directement \u00e0 partir de l’interface web. On se propose plugin par plugin d’effectuer l’installation et d’\u00e9valuer dans notre contexte la pertinence et l”apport de ces plugins.<\/p>\n\n\n\n MsaView<\/a> de Colin Diesh <\/p>\n\n\n\n Description : multiple sequence alignment browser plugin for JBrowse 2INSTALL<\/p>\n\n\n\n GDC<\/a> Garrett Stevens, Colin Diesh, Rob Buels, Caroline Bridge<\/p>\n\n\n\n Description : JBrowse 2 plugin for integrating with GDC resourcesINSTALL<\/p>\n\n\n\n Quantseq<\/a> Elliot Hershberg<\/p>\n\n\n\n Description : External JB2 plugin implementing a QuantitativeSequence track for displaying base-resolution models.INSTALL<\/p>\n\n\n\n GWAS<\/a> Colin Diesh<\/p>\n\n\n\n Description : Plugin for displaying GWAS results such as manhattan plot renderingsINSTALL<\/p>\n\n\n\n UCSC<\/a> Colin Diesh<\/p>\n\n\n\n Description : A JBrowse 2 plugin for accessing the UCSC APIINSTALL<\/p>\n\n\n\n Biothings<\/a> Colin Diesh<\/p>\n\n\n\n Description : Adapts to APIs like mygene.info to get super rich gene annotationsINSTALL<\/p>\n\n\n\n Ideogram<\/a> Colin Diesh, Caroline Bridge<\/p>\n\n\n\n Description : JBrowse 2 plugin for rendering ideogramsINSTALL<\/p>\n\n\n\n CIVIC<\/a> Colin Diesh<\/p>\n\n\n\n Description : JBrowse 2 plugin for fetching data from the CIVIC clinical interpretation of cancer variantsINSTALL<\/p>\n\n\n\n ICGC<\/a> Caroline Bridge<\/p>\n\n\n\n Description : JBrowse 2 plugin to integrate resources from the ICGCINSTALL<\/p>\n\n\n\n Reactome<\/a> Caroline Bridge<\/p>\n\n\n\n Description : JBrowse 2 plugin to integrate resources from ReactomeINSTALL<\/p>\n\n\n\n MultilevelLinearView<\/a> Caroline Bridge<\/p>\n\n\n\n Description : JBrowse 2 plugin that adds a linear genome view that can show multiple zoom levelsINSTALL<\/p>\n\n\n\n TrackHubRegistry<\/a> Colin Diesh<\/p>\n\n\n\n Description : JBrowse 2 plugin that adds ability to connect to hubs from the trackhub registry. Note: only for use with v2.3.0 or greaterINSTALL<\/p>\n\n\n\n RefGet<\/a> Emilio Righi<\/p>\n\n\n\n Description : JBrowse 2 plugin that adds ability to retrieve sequences from refget API compliant serversINSTALL<\/p>\n\n\n\n Linkout<\/a> NAL-i5K<\/p>\n\n\n\n Description : JBrowse 2 plugin that links out to feature page based on dbxrefINSTALL<\/p>\n\n\n\n \u25bc Analyse et exploration des Plugins<\/summary>\n